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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11214681_11215641_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11214681 - 11215641
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATGAT
U12 Branch Point Sequence:
CTTGCCTCAATC
Flanking Amino Acid:
DGGCIMASAIGHPFPKVFNQ
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
72.1
0.55
1.1
62
44.2
Major PPT
80.2
0.68
0.9
77.9
35.5
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
61.8
0.35
1.7
70.19
41.8

Associated Gene:

Gene:
ADAM19
Ensembl Gene ID:
ENSAPLG00000013888
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041238
11195085 - 11225608
30524
ENSAPLT00000018355
11195265 - 11225608
30344
ENSAPLT00000014535
11195085 - 11224760
29676