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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11220245_11220471_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11220245 - 11220471
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGACTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CTTTCTCTGACT
Flanking Amino Acid:
ICSQKKAPQFSDTSGNGHAN
Intron Amino Acid Position:
734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
67.7
0.4
1
65.7
40
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
65.9
0.58
1.7
83.72
37.5

Associated Gene:

Gene:
ADAM19
Ensembl Gene ID:
ENSAPLG00000013888
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018355
11195265 - 11225608
30344
ENSAPLT00000014535
11195085 - 11224760
29676
ENSAPLT00000041238
11195085 - 11225608
30524