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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11230105_11231141_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11230105 - 11231141
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
ACCATCAGACCT
Flanking Amino Acid:
TPLGALSVLISAILSSYLLG
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
76.4
28.1
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
77.8
0.63
0.9
72.9
37.4
Minor 5ss
35.1
-1.7
2.8
43.5
44.2
Minor BPS
40.3
-0.6
1.8
52.24
42.4

Associated Gene:

Gene:
NIPAL4
Ensembl Gene ID:
ENSAPLG00000014781
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015411
11228366 - 11236667
8302