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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11231233_11232200_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11231233 - 11232200
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TGTGTTTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTAATTCACT
Flanking Amino Acid:
DWLWWAGLLTMGGGEAANFA
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
74.5
0.55
1
73.5
41.9
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
51
0.11
2.2
78.2
43.7

Associated Gene:

Gene:
NIPAL4
Ensembl Gene ID:
ENSAPLG00000014781
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015411
11228366 - 11236667
8302