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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11232258_11234882_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11232258 - 11234882
Intron Length:
2625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TGTGCTTTGATT
Flanking Amino Acid:
RLVEKGGTRAGDGGHGYLKD
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
84
0.85
0.9
75
39.9
Major PPT
78
0.63
0.9
69.8
41.2
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
66.9
0.61
1.3
79.17
37.6

Associated Gene:

Gene:
NIPAL4
Ensembl Gene ID:
ENSAPLG00000014781
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015411
11228366 - 11236667
8302