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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11235132_11236525_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11235132 - 11236525
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTGCA
5'SS Class:
major
3'SS Sequence:
CATGGTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTGTTTTATCT
Flanking Amino Acid:
RLGANGSCSNGSLLTLSCLS
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
62.4
38.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
68.7
0.42
1
60.7
40
Minor 5ss
26.6
-2.7
3.2
32.2
42.4
Minor BPS
57.7
0.32
1.7
74.38
43.4

Associated Gene:

Gene:
NIPAL4
Ensembl Gene ID:
ENSAPLG00000014781
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015411
11228366 - 11236667
8302