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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11245993_11246529_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11245993 - 11246529
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GCCATCCCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTCACTGACT
Flanking Amino Acid:
DGKDEIIKNVPLKKMADRIR
Intron Amino Acid Position:
1199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
70.7
0.47
0.9
65.8
35.9
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
58.5
0.35
2
81.53
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002692
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002773
11244243 - 11289229
44987