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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11246678_11247150_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11246678 - 11247150
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
GTCCTCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TCTTACCTAACT
Flanking Amino Acid:
IPVGTNEFTAEQCFGDGLNW
Intron Amino Acid Position:
1149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69.4
35.6
Major BPS
69.2
0.48
1
61
37.1
Major PPT
75.7
0.58
0.8
66
35.9
Minor 5ss
33.1
-1.9
3.3
40
40.1
Minor BPS
66.2
0.59
1.9
85.95
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002692
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002773
11244243 - 11289229
44987