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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11257365_11265930_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11257365 - 11265930
Intron Length:
8566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTAACTTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTGCTTCTAACT
Flanking Amino Acid:
VQPYYLYGSKPLNIAYSHIY
Intron Amino Acid Position:
892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
76.3
0.59
0.9
73
36.8
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
53.1
0.17
1.7
70.42
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002692
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002773
11244243 - 11289229
44987