About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11267483_11267865_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11267483 - 11267865
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACTGC
5'SS Class:
major
3'SS Sequence:
CTTCTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
ATATAGCAAACA
Flanking Amino Acid:
ETLLKQRHVQLLGRSIDLNR
Intron Amino Acid Position:
756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
57.6
42.7
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
86.4
0.82
0.7
79.8
32.1
Minor 5ss
42.5
-0.8
3.2
59.3
45.4
Minor BPS
39.7
-0.7
2.5
56.49
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002692
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002773
11244243 - 11289229
44987