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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11268989_11269556_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11268989 - 11269556
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATGAT
U12 Branch Point Sequence:
ACACCCTCATGA
Flanking Amino Acid:
QFLYDEIEAEVNLCFDQFVY
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
72.1
0.55
1.1
62
44.2
Major PPT
84.9
0.78
0.7
77.7
31
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
42.6
-0.5
2
48.44
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002692
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002773
11244243 - 11289229
44987