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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11269654_11270384_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11269654 - 11270384
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGAGCT
5'SS Class:
major
3'SS Sequence:
TTCTTGCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
AAGGCATGATCT
Flanking Amino Acid:
ILETKEPSMMEYVLYPLDLY
Intron Amino Acid Position:
661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
66.2
38
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
83.9
0.76
0.8
81.3
30.8
Minor 5ss
34.3
-1.8
3.5
45.4
43.3
Minor BPS
43.2
-0.4
2
57.88
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002692
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002773
11244243 - 11289229
44987