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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11270542_11271084_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11270542 - 11271084
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGACTA
5'SS Class:
major
3'SS Sequence:
CTCTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TGCCCTCCCACT
Flanking Amino Acid:
FFFTHLLNISEALQQCCDLS
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
69.5
36.5
Major BPS
50
0
1.2
61.8
35.9
Major PPT
79
0.65
0.9
75.9
38
Minor 5ss
30.2
-2.3
3.1
36.2
41.7
Minor BPS
41.3
-0.6
2.1
59.07
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002692
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002773
11244243 - 11289229
44987