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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11280533_11281879_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11280533 - 11281879
Intron Length:
1347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TGTTATTGAAAC
Flanking Amino Acid:
TPSEKHMLLKVMGFGLYLMD
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
81.3
0.7
0.8
73.2
37.3
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
52.6
0.06
1.7
66.74
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002692
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002773
11244243 - 11289229
44987