About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11282009_11282720_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11282009 - 11282720
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAGGTCCC
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAC
U12 Branch Point Sequence:
TGACCCCTATTG
Flanking Amino Acid:
FLANHNRITQCLHQQLEVIP
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.9
79.7
31.2
Major BPS
62.5
0.31
1.2
54.8
42.1
Major PPT
77.3
0.62
1
73.6
41.2
Minor 5ss
23.8
-3
3.9
35.8
41
Minor BPS
45.7
-0.4
1.9
51.67
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002692
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002773
11244243 - 11289229
44987