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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11283327_11284222_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11283327 - 11284222
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
GCTGCGGTGACC
Flanking Amino Acid:
TKLMKFMYFQRKAIERFCSE
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
75.7
0.58
0.9
65.6
41
Minor 5ss
38.1
-1.3
3.4
55.9
48.3
Minor BPS
41.3
-0.7
2.6
53.74
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002692
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002773
11244243 - 11289229
44987