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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11286502_11286580_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11286502 - 11286580
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAACAA
U12 Branch Point Sequence:
CCTGCCCCAACA
Flanking Amino Acid:
IEQATVHSSMNEMLEEGHEY
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
44.8
-0.3
1
46.9
34.5
Major PPT
79
0.65
0.9
75.9
38
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
47.7
-0.1
2
59.96
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002692
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002773
11244243 - 11289229
44987