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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11286671_11288742_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11286671 - 11288742
Intron Length:
2072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTCCA
5'SS Class:
major
3'SS Sequence:
TTTTCACCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTATGTTAATC
Flanking Amino Acid:
EPPPSSIMYQANFDTNFEDR
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.2
62.7
43.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.9
0.67
0.8
73.9
30.1
Minor 5ss
39
-1.2
3
51.6
44.8
Minor BPS
53.2
0.08
2.1
67.23
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002692
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002773
11244243 - 11289229
44987