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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11302399_11302833_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11302399 - 11302833
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTCTC
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CAGCACTGACCT
Flanking Amino Acid:
EENSVIHRDLAARNCLVGES
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
92.5
0.96
0.6
88.3
21.4
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
43.8
-0.3
1.9
56.65
45

Associated Gene:

Gene:
ITK
Ensembl Gene ID:
ENSAPLG00000003452
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003574
11299236 - 11326607
27372