Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11303051_11303317_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11303051 - 11303317

Intron Length:

267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTGTCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAG

U12 Branch Point Sequence:

TCTTTTTCCACC

Flanking Amino Acid:

EDFIEEAKVLMKLSHSKLVQ

Intron Amino Acid Position:

422

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

83.8

34.5

Major BPS

67.2

0.43

1.5

77.4

37.3

Major PPT

81.2

0.7

0.8

75.9

32.8

Minor 5ss

39.9

-1.1

2.9

56.1

41.4

Minor BPS

49.5

-0

1.9

65.33

Associated Gene:

Gene:

ITK

Ensembl Gene ID:

ENSAPLG00000003452

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003574

11299236 - 11326607

27372