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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11303490_11304206_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11303490 - 11304206
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGGAGC
5'SS Class:
major
3'SS Sequence:
TTACAATCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTTCTTTACAA
Flanking Amino Acid:
KAPITAGLSYGKLVINPSEL
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
60.8
43.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
65.6
0.35
1
59.6
40.3
Minor 5ss
39.2
-1.2
3.1
51.9
45.1
Minor BPS
61.7
0.36
1.7
71.99
40.5

Associated Gene:

Gene:
ITK
Ensembl Gene ID:
ENSAPLG00000003452
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003574
11299236 - 11326607
27372