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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11305165_11305801_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11305165 - 11305801
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGCTG
5'SS Class:
major
3'SS Sequence:
TCATCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAAAG
Flanking Amino Acid:
YTVSVFTKALSTDNNPVIKH
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
64.5
46.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
84.3
0.77
0.8
76.6
37.2
Minor 5ss
33.3
-1.9
3.6
46.8
48.5
Minor BPS
64.5
0.32
1.7
72.8
39.6

Associated Gene:

Gene:
ITK
Ensembl Gene ID:
ENSAPLG00000003452
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003574
11299236 - 11326607
27372