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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1130566_1130854_F

Intron Information:

Intron Rank:
135759
Intron Class:
major
Intron Phase:
Intron Coordinates:
1130566 - 1130854
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTGTGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGCTCCCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
70.3
0.46
1
65
40.8
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
63
0.4
1.7
72.32
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023096
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044888
1129892 - 1132620
2729