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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11308197_11308775_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11308197 - 11308775
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CGCATTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CGCATTTTAACA
Flanking Amino Acid:
EHWWLIQDKNGHEGYVPSSY
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1
69.7
41.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
69.9
0.45
1
64.7
40.1
Minor 5ss
35
-1.7
2.8
37.9
39.5
Minor BPS
57.9
0.24
1.4
59.72
40.6

Associated Gene:

Gene:
ITK
Ensembl Gene ID:
ENSAPLG00000003452
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003574
11299236 - 11326607
27372