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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11309802_11310438_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11309802 - 11310438
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGGAT
5'SS Class:
major
3'SS Sequence:
GATTTCATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CCTTTCTTGATT
Flanking Amino Acid:
GCIEYDPTRNASKKPLPPTP
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
67.5
37.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.7
0.65
0.9
74.8
39.5
Minor 5ss
37.1
-1.5
3.6
51.3
47.8
Minor BPS
70.2
0.72
1.2
77.73
39.7

Associated Gene:

Gene:
ITK
Ensembl Gene ID:
ENSAPLG00000003452
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003574
11299236 - 11326607
27372