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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1131032_1132133_F

Intron Information:

Intron Rank:
135760
Intron Class:
major
Intron Phase:
Intron Coordinates:
1131032 - 1132133
Intron Length:
1102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGTAT
U12 Branch Point Sequence:
AAGCTTGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
59.2
0.23
1.4
61.1
45.5
Major PPT
83.8
0.76
0.8
81.3
30.8
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
40.4
-0.6
2
51.77
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023096
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044888
1129892 - 1132620
2729