About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11312053_11313831_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11312053 - 11313831
Intron Length:
1779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATCCCCTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CCTTCTTTAATC
Flanking Amino Acid:
IPCQYKYPFQIIHDNYILYV
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75.5
0.57
0.8
66
35.2
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
74.2
0.74
1.2
73.34
38.7

Associated Gene:

Gene:
ITK
Ensembl Gene ID:
ENSAPLG00000003452
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003574
11299236 - 11326607
27372