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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11343303_11345899_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11343303 - 11345899
Intron Length:
2597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTGCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAT
U12 Branch Point Sequence:
GTGACAGTGATG
Flanking Amino Acid:
LTNLQVVIKKAPGSASEASF
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
61.1
0.28
1.2
52.7
43.2
Major PPT
76.7
0.6
0.9
76.1
37.8
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
40.5
-0.8
2.2
44.83
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004482
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022308
11338836 - 11348440
9605