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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11345974_11347050_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11345974 - 11347050
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGAATT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTTGTTTGACA
Flanking Amino Acid:
SVSASETPQTNESIPVHSQQ
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
77.9
36.4
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
82.7
0.74
1
79.9
37.7
Minor 5ss
42.3
-0.8
3.2
68.6
41.7
Minor BPS
69.2
0.6
1.7
81.99
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004482
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004595
11338836 - 11348440
9605