About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11345992_11356192_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11345992 - 11356192
Intron Length:
10201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATGTACC
5'SS Class:
major
3'SS Sequence:
CAATATGCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TTAATCTCAATA
Flanking Amino Acid:
LNQPGISMRQHTTEILTV*
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
65.6
38.5
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
61.8
0.27
1
54.2
40.7
Minor 5ss
45.3
-0.5
2.4
61
37.1
Minor BPS
59.5
0.3
1.5
69.08
37.1

Associated Gene:

Gene:
SGCD
Ensembl Gene ID:
ENSAPLG00000004614
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025112
11345967 - 11616036
270070