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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11346267_11347050_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11346267 - 11347050
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTTGTTTGACA
Flanking Amino Acid:
DYLEVTSSLQNESIPVHSQQ
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
66.1
45.1
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
82.7
0.74
1
79.9
37.7
Minor 5ss
37.8
-1.4
3.1
48.3
47.5
Minor BPS
69.2
0.6
1.7
81.99
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004482
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023902
11340793 - 11348440
7648
ENSAPLT00000022308
11338836 - 11348440
9605
ENSAPLT00000004600
11338836 - 11348440
9605
ENSAPLT00000046658
11340793 - 11348440
7648