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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11347166_11347759_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11347166 - 11347759
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GCACGATCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATT
Flanking Amino Acid:
VLVLGLLLIRRYLHNMKKMS
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1.2
84.4
33.5
Major BPS
100
1.24
0.5
100
0
Major PPT
60.2
0.23
0.9
55.2
40.2
Minor 5ss
39.8
-1.1
2.8
52.2
37.4
Minor BPS
59.7
0.39
1.7
80.3
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004482
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004600
11338836 - 11348440
9605
ENSAPLT00000004595
11338836 - 11348440
9605
ENSAPLT00000023902
11340793 - 11348440
7648
ENSAPLT00000022308
11338836 - 11348440
9605