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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11347800_11348201_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11347800 - 11348201
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CACTTTTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTGTTTAACA
Flanking Amino Acid:
HNMKKMSNFASSVAFWKPKR
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.7
0.6
0.9
72.2
37.5
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
70.4
0.64
1.7
79.83
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004482
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022308
11338836 - 11348440
9605
ENSAPLT00000004600
11338836 - 11348440
9605
ENSAPLT00000004595
11338836 - 11348440
9605
ENSAPLT00000023902
11340793 - 11348440
7648