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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11351930_11355917_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11351930 - 11355917
Intron Length:
3988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCAAAA
U12 Branch Point Sequence:
TCTTCCTTGACA
Flanking Amino Acid:
FRWIMIQIFIVHTTSETVVR
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
48.7
-0
1
53.2
28.8
Major PPT
79.2
0.66
0.9
75.9
32.7
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
85.4
1.11
1
86.55
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004546
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004672
11351881 - 11363264
11384