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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11356951_11357045_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11356951 - 11357045
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAAGA
5'SS Class:
major
3'SS Sequence:
TATTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGATCTTTACCA
Flanking Amino Acid:
CSTEPIPLPEVTTEFPSTGL
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.2
40.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.8
0.83
0.8
84.8
35.4
Minor 5ss
31.1
-2.2
3.2
40.8
45
Minor BPS
65.6
0.49
1.6
72.84
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004546
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004672
11351881 - 11363264
11384