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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11358715_11360399_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11358715 - 11360399
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
GTGCCAGTAATG
Flanking Amino Acid:
QTQETTLGPSETSASSDNNA
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
69.8
42.4
Major BPS
76.8
0.67
1
66
40.9
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
30.6
-2.2
3.3
40.1
45.6
Minor BPS
44.1
-0.5
2.2
50.75
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004546
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004672
11351881 - 11363264
11384