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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11360453_11361076_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11360453 - 11361076
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTCTCAGACTT
Flanking Amino Acid:
NAQKVDVKLPLSISVILSVS
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
91.3
0.93
0.6
84.4
30.6
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
46.4
-0.2
1.9
70.92
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004546
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004672
11351881 - 11363264
11384