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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11361162_11361623_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11361162 - 11361623
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ACAATATTATTT
Flanking Amino Acid:
ITMLTSLFWKRKHRRKFILK
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.2
85.3
32.2
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
79
0.65
0.9
70.7
40.5
Minor 5ss
41.7
-0.9
2.8
54.1
36.1
Minor BPS
44.7
-0.3
1.8
56.62
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004546
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004672
11351881 - 11363264
11384