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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11405220_11413559_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11405220 - 11413559
Intron Length:
8340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGAA
5'SS Class:
strong_major
3'SS Sequence:
GTAATTCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAAAAATTAATT
Flanking Amino Acid:
ELKLESKDGELWCHFQEMSH
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
77.6
32.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.6
0.53
1
66.6
40.3
Minor 5ss
35.6
-1.6
3.3
46.2
49.1
Minor BPS
51.1
0.11
1.8
69.76
40.3

Associated Gene:

Gene:
SGCD
Ensembl Gene ID:
ENSAPLG00000004614
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004761
11405109 - 11540314
135206