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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11413684_11445076_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11413684 - 11445076
Intron Length:
31393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAA
U12 Branch Point Sequence:
GGCTCTGTAACT
Flanking Amino Acid:
NVRADPFKELRLESPTRALV
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
67.1
0.42
1
59
37.9
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
56.2
0.27
2.1
73.04
43.9

Associated Gene:

Gene:
SGCD
Ensembl Gene ID:
ENSAPLG00000004614
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029897
11356135 - 11616036
259902
ENSAPLT00000029830
11410716 - 11616036
205321
ENSAPLT00000025112
11345967 - 11616036
270070
ENSAPLT00000004761
11405109 - 11540314
135206
ENSAPLT00000031552
11386188 - 11616036
229849