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Intron Name: Anas_platyrhynchos_platyrhynchos_14_11445150_11459798_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11445150 - 11459798

Intron Length:

14649

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAAAGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTGTGATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAA

U12 Branch Point Sequence:

TGTTTTGTGATT

Flanking Amino Acid:

VVGAERLRVLGAEGTVFPKS

Intron Amino Acid Position:

166

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

77.5

30.5

Major BPS

73.5

0.59

81.3

29.9

Major PPT

81.3

0.71

0.9

78.1

40.1

Minor 5ss

31.4

-2.1

3.5

46.6

48.7

Minor BPS

51.1

0.12

74.33

37.3

Associated Gene:

Gene:

SGCD

Ensembl Gene ID:

ENSAPLG00000004614

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029830

11410716 - 11616036

205321

ENSAPLT00000025112

11345967 - 11616036

270070

ENSAPLT00000004761

11405109 - 11540314

135206

ENSAPLT00000031552

11386188 - 11616036

229849

ENSAPLT00000029897

11356135 - 11616036

259902