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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11462386_11485870_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11462386 - 11485870
Intron Length:
23485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
GGTCTCGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CCCATCTCACGT
Flanking Amino Acid:
LYAKEIRSRPGNPLYFQSAR
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
39.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
71.9
0.49
1
61.6
44.5
Minor 5ss
44.1
-0.6
2.9
63.9
41.5
Minor BPS
39.2
-0.7
1.9
47.3
45.4

Associated Gene:

Gene:
SGCD
Ensembl Gene ID:
ENSAPLG00000004614
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029830
11410716 - 11616036
205321
ENSAPLT00000025112
11345967 - 11616036
270070
ENSAPLT00000004761
11405109 - 11540314
135206
ENSAPLT00000031552
11386188 - 11616036
229849
ENSAPLT00000029897
11356135 - 11616036
259902