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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11799129_11834486_R

Intron Information:

Intron Rank:
149603
Intron Class:
major
Intron Phase:
Intron Coordinates:
11799129 - 11834486
Intron Length:
35358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTATGTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGGGACTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
75.4
37.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
80.4
0.68
0.9
77.1
37
Minor 5ss
47.9
-0.2
2.8
65.3
45.9
Minor BPS
51.4
0.12
1.9
70.19
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028014
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028874
11797640 - 11834608
36969