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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11837639_11860395_R

Intron Information:

Intron Rank:
149605
Intron Class:
major
Intron Phase:
Intron Coordinates:
11837639 - 11860395
Intron Length:
22757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTGTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
89.7
0.89
0.7
84
31
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
67.2
0.52
1.7
76.18
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028014
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039774
11835874 - 11927059
91186
ENSAPLT00000029375
11797640 - 11927059
129420