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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11849969_11926755_R

Intron Information:

Intron Rank:
149607
Intron Class:
major
Intron Phase:
Intron Coordinates:
11849969 - 11926755
Intron Length:
76787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TATCTCCATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCCTCTTTTATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
76.9
31.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
72.3
0.5
0.9
67.3
33.8
Minor 5ss
36.2
-1.6
3.3
50.7
41.2
Minor BPS
59.4
0.28
1.6
65.55
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028014
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031620
11849898 - 11927059
77162