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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11899417_11909968_F

Intron Information:

Intron Rank:
141265
Intron Class:
major
Intron Phase:
Intron Coordinates:
11899417 - 11909968
Intron Length:
10552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTCCCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
75.3
40.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.4
0.84
0.7
84.9
29.9
Minor 5ss
42.4
-0.8
2.9
60.3
44
Minor BPS
70.8
0.65
1.6
79.96
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026058
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029389
11899133 - 11913694
14562