About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11948226_11948862_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11948226 - 11948862
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ACAGCCTTAAAT
Flanking Amino Acid:
GPLAEHDLHQNAVSALHWSP
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
86.8
0.83
0.7
84.9
29.9
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
63.4
0.5
1.6
72.58
43.9

Associated Gene:

Gene:
GEMIN5
Ensembl Gene ID:
ENSAPLG00000006816
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007100
11947764 - 11966978
19215