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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11949968_11950354_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11949968 - 11950354
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTATTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AATAATTTCACT
Flanking Amino Acid:
RLPAWQDEVQEAGEVPNGEL
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
80
0.75
1
78.6
31
Major PPT
81
0.7
0.9
78.1
36.2
Minor 5ss
41.2
-1
2.5
51.4
45.1
Minor BPS
48.8
-0
1.9
69.42
41.1

Associated Gene:

Gene:
GEMIN5
Ensembl Gene ID:
ENSAPLG00000006816
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007100
11947764 - 11966978
19215