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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11950798_11951253_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11950798 - 11951253
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTAAATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TACACTTTAAAT
Flanking Amino Acid:
RSTEIVSSSFGGELLLWDLT
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
72.7
44.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79.4
0.66
0.9
72.7
41.7
Minor 5ss
34.7
-1.7
2.6
34.3
41.4
Minor BPS
64.6
0.54
1.4
75.22
41.2

Associated Gene:

Gene:
GEMIN5
Ensembl Gene ID:
ENSAPLG00000006816
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007100
11947764 - 11966978
19215