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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11951414_11952036_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11951414 - 11952036
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGAACC
5'SS Class:
major
3'SS Sequence:
AAATATTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TCTTCCTTAAAT
Flanking Amino Acid:
LLFSISMDRDVKCWDLSTLD
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.6
33.7
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
67.4
0.39
1
63.7
42.6
Minor 5ss
37.2
-1.5
3
50.1
39
Minor BPS
84.3
1.15
1.2
93.4
34.6

Associated Gene:

Gene:
GEMIN5
Ensembl Gene ID:
ENSAPLG00000006816
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007100
11947764 - 11966978
19215